High content analysis tools


Boutter et.al.  paper supplementary

Warning! Extract .zip files, rename .txt files to .m 

CellProfiler install and custom developed modules

  • Download CellProfiler v1.0.5122 [here ]
  • Detect spots using 'a trous' wavelet transform [here ]

CellProfiler pipeline

  • CellProfiler pipeline [here ]
  • List of extracted features [here]
  • Parallelize CellProfiler for multi core machines using Matlab Parallel Toolbox [coming soon]

Advanced Cell Classifier

  • Download ready to use ACC [here ] 














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