High content analysis tools

 

Banerjee et.al.  method paper supplementary

Warning! Rename .txt files to .m

CellProfiler modules

  • Download CellProfiler v1.0.5122 [here ]
  • Export cellular metadata to Advanced Cell Classifier [here ]
  • Detect spots using 'a trous' wavelet transform [here ]
  • Cusom version of the MeasureObjectIntensity modul for median values [here ]

Endocytosis analysis

  • CellProfiler pipeline [here ]
  • MatLab script to summarize CellProfiler data [here ]

Binding/Acidification/Fusion analysis

  • CellProfiler pipeline [here ]
  • MatLab script, converts CellProfiler data into .csv tables [here ]

Uncoating analysis

  • CellProfiler pipeline [here ]
  • MatLab script to refactor data for Advaced Cell Classifier (use as a complementary method to ExportToACC on clusters) [here ]
  • List of extracted features [here ]

Nuclear import/Infection analysis

  • CellProfiler pipeline [here ]
  • MatLab script to refactor data for Advaced Cell Classifier (use as a complementary method to ExportToACC on clusters) [here]
  • List of extracted features [here]

 

 

 

 

 

 

 

 

 

 

 

 

 

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